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BMCBI
2010
101views more  BMCBI 2010»
15 years 4 months ago
Hidden Markov model speed heuristic and iterative HMM search procedure
Background: Profile hidden Markov models (profile-HMMs) are sensitive tools for remote protein homology detection, but the main scoring algorithms, Viterbi or Forward, require con...
L. Steven Johnson, Sean R. Eddy, Elon Portugaly
KDD
2004
ACM
144views Data Mining» more  KDD 2004»
16 years 5 months ago
IncSpan: incremental mining of sequential patterns in large database
Many real life sequence databases, such as customer shopping sequences, medical treatment sequences, etc., grow incrementally. It is undesirable to mine sequential patterns from s...
Hong Cheng, Xifeng Yan, Jiawei Han
ISCAS
2005
IEEE
129views Hardware» more  ISCAS 2005»
15 years 10 months ago
A reconfigurable architecture for scanning biosequence databases
—Unknown protein sequences are often compared to a set of known sequences (a database scan) to detect functional similarities. Even though efficient dynamic programming algorithm...
Timothy F. Oliver, Bertil Schmidt, Douglas L. Mask...
MICCAI
2009
Springer
16 years 5 months ago
Enforcing Monotonic Temporal Evolution in Dry Eye Images
We address the problem of identifying dry areas in the tear film as part of a diagnostic tool for dry-eye syndrome. The requirement is to identify and measure the growth of the dry...
Tamir Yedidya, Peter Carr, Richard Hartley, Jea...
TKDE
2008
132views more  TKDE 2008»
15 years 4 months ago
Distributed Suffix Tree Overlay for Peer-to-Peer Search
Establishing an appropriate semantic overlay on peer-to-peer (P2P) networks to obtain both semantic ability and scalability is a challenge. Current DHT-based P2P networks are limit...
Hai Zhuge, Liang Feng