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NDSS
2006
IEEE
15 years 6 months ago
Toward a Practical Data Privacy Scheme for a Distributed Implementation of the Smith-Waterman Genome Sequence Comparison Algorit
Volunteer distributed computations utilize spare processor cycles of personal computers that are connected to the Internet. The resulting platforms provide computational power pre...
Doug Szajda, Michael Pohl, Jason Owen, Barry G. La...
CIKM
2004
Springer
15 years 6 months ago
Scalable sequential pattern mining for biological sequences
Biosequences typically have a small alphabet, a long length, and patterns containing gaps (i.e., “don’t care”) of arbitrary size. Mining frequent patterns in such sequences ...
Ke Wang, Yabo Xu, Jeffrey Xu Yu
ICPP
2003
IEEE
15 years 6 months ago
FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane S...
FATES
2003
Springer
15 years 6 months ago
Auto-generating Test Sequences Using Model Checkers: A Case Study
Use of model-checking approaches for test generation from requirement models have been proposed by several researchers. These approaches leverage the witness (or counter-example) ...
Mats Per Erik Heimdahl, Sanjai Rayadurgam, Willem ...
CIKM
2009
Springer
15 years 4 months ago
Suffix trees for very large genomic sequences
A suffix tree is a fundamental data structure for string searching algorithms. Unfortunately, when it comes to the use of suffix trees in real-life applications, the current metho...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...