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178
Voted
BMCBI
2002
108views more  BMCBI 2002»
15 years 3 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
148
Voted
VLDB
2002
ACM
108views Database» more  VLDB 2002»
15 years 3 months ago
Generic Database Cost Models for Hierarchical Memory Systems
Accurate prediction of operator execution time is a prerequisite for database query optimization. Although extensively studied for conventional disk-based DBMSs, cost modeling in ...
Stefan Manegold, Peter A. Boncz, Martin L. Kersten
179
Voted
BMCBI
2010
172views more  BMCBI 2010»
14 years 10 months ago
Nonparametric identification of regulatory interactions from spatial and temporal gene expression data
Background: The correlation between the expression levels of transcription factors and their target genes can be used to infer interactions within animal regulatory networks, but ...
Anil Aswani, Soile V. E. Keränen, James Brown...
KDD
2007
ACM
202views Data Mining» more  KDD 2007»
16 years 4 months ago
Support feature machine for classification of abnormal brain activity
In this study, a novel multidimensional time series classification technique, namely support feature machine (SFM), is proposed. SFM is inspired by the optimization model of suppo...
Wanpracha Art Chaovalitwongse, Ya-Ju Fan, Rajesh C...
ICDE
2005
IEEE
144views Database» more  ICDE 2005»
16 years 5 months ago
ViteX: A Streaming XPath Processing System
We present ViteX, an XPath processing system on XML streams with polynomial time complexity. ViteX uses a polynomial-space data structure to encode an exponential number of patter...
Yi Chen, Susan B. Davidson, Yifeng Zheng