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» Tools for visually exploring biological networks
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BMCBI
2011
14 years 8 months ago
VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
Background: Visualization of orthogonal (disjoint) or overlapping datasets is a common task in bioinformatics. Few tools exist to automate the generation of extensively-customizab...
Hanbo Chen, Paul C. Boutros
BMCBI
2010
164views more  BMCBI 2010»
15 years 1 months ago
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be...
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geer...
BMCBI
2010
133views more  BMCBI 2010»
15 years 1 months ago
New components of the Dictyostelium PKA pathway revealed by Bayesian analysis of expression data
Background: Identifying candidate genes in genetic networks is important for understanding regulation and biological function. Large gene expression datasets contain relevant info...
Anup Parikh, Eryong Huang, Christopher Dinh, Blaz ...
CANDT
2009
15 years 5 months ago
Analyzing (social media) networks with NodeXL
We present NodeXL, an extendible toolkit for network overview, discovery and exploration implemented as an add-in to the Microsoft Excel 2007 spreadsheet software. We demonstrate ...
Marc A. Smith, Ben Shneiderman, Natasa Milic-Frayl...
CD
2004
Springer
15 years 5 months ago
A Tailorable Environment for Assessing the Quality of Deployment Architectures in Highly Distributed Settings
Abstract. A distributed software system's deployment architecture can have a significant impact on the system's properties. These properties will depend on various system...
Marija Mikic-Rakic, Sam Malek, Nels Beckman, Nenad...