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» Tools for visually exploring biological networks
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NAR
2006
78views more  NAR 2006»
15 years 1 months ago
CrossLink: visualization and exploration of sequence relationships between (micro) RNAs
CrossLink is a versatile tool for the exploration of relationships between RNA sequences. After a parametrization phase, CrossLink delegates the determination of sequence relation...
Tobias Dezulian, Martin Schaefer, Roland Wiese, De...
ICWSM
2009
14 years 11 months ago
Gephi: An Open Source Software for Exploring and Manipulating Networks
Gephi is an open source software for graph and network analysis. It uses a 3D render engine to display large networks in real-time and to speed up the exploration. A flexible and ...
Mathieu Bastian, Sebastien Heymann, Mathieu Jacomy
BMCBI
2007
176views more  BMCBI 2007»
15 years 1 months ago
Genome Expression Pathway Analysis Tool - Analysis and visualization of microarray gene expression data under genomic, proteomic
Background: Regulation of gene expression is relevant to many areas of biology and medicine, in the study of treatments, diseases, and developmental stages. Microarrays can be use...
Markus Weniger, Julia C. Engelmann, Jörg Schu...
BMCBI
2006
155views more  BMCBI 2006»
15 years 1 months ago
CAVER: a new tool to explore routes from protein clefts, pockets and cavities
Background: The main aim of this study was to develop and implement an algorithm for the rapid, accurate and automated identification of paths leading from buried protein clefts, ...
Martin Petrek, Michal Otyepka, Pavel Banás,...
DEBU
2008
187views more  DEBU 2008»
15 years 1 months ago
Social SQL: Tools for Exploring Social Databases
Social media are constructed from the collective contributions of potentially millions of individuals and present an increasingly common and large scale form of database. As these...
Marc A. Smith, Vladimir Barash