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BMCBI
2005
147views more  BMCBI 2005»
14 years 11 months ago
GATA: a graphic alignment tool for comparative sequence analysis
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
David A. Nix, Michael B. Eisen
BMCBI
2004
208views more  BMCBI 2004»
14 years 11 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
MA
2010
Springer
94views Communications» more  MA 2010»
14 years 10 months ago
On sparse estimation for semiparametric linear transformation models
: Semiparametric linear transformation models have received much attention due to its high flexibility in modeling survival data. A useful estimating equation procedure was recent...
Hao Helen Zhang, Wenbin Lu, Hansheng Wang
ICWSM
2009
14 years 9 months ago
Targeting Sentiment Expressions through Supervised Ranking of Linguistic Configurations
User generated content is extremely valuable for mining market intelligence because it is unsolicited. We study the problem of analyzing users' sentiment and opinion in their...
Jason S. Kessler, Nicolas Nicolov
BMCBI
2011
14 years 6 months ago
Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in i
Background: In the last decades, microarray technology has spread, leading to a dramatic increase of publicly available datasets. The first statistical tools developed were focuse...
Paolo G. V. Martini, Davide Risso, Gabriele Sales,...