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» Toward Verified Biological Models
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BIB
2007
137views more  BIB 2007»
14 years 9 months ago
Current progress in network research: toward reference networks for key model organisms
The collection of multiple genome-scale datasets is now routine, and the frontier of research in systems biology has shifted accordingly. Rather than clustering a single dataset t...
Balaji S. Srinivasan, Nigam H. Shah, Jason Flannic...
BMCBI
2004
123views more  BMCBI 2004»
14 years 9 months ago
A two-way interface between limited Systems Biology Markup Language and R
Background: Systems Biology Markup Language (SBML) is gaining broad usage as a standard for representing dynamical systems as data structures. The open source statistical programm...
Tomas Radivoyevitch
56
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ATAL
2003
Springer
15 years 2 months ago
Towards model checking interpreted systems
We show how it is possible to pair the NuSMV model checker with Akka, a software platform used to check validity of propositional modal formulas, to verify properties of multi-age...
Alessio Lomuscio, Franco Raimondi, Marek J. Sergot
ASM
2010
ASM
15 years 6 months ago
Towards Validation of Requirements Models
Abstract. The aim of this paper is to gradually introduce formalism in the requirement engineering phase in order to facilitate its validation. We analyze and elicit our requiremen...
Atif Mashkoor, Abderrahman Matoussi
NAR
2006
98views more  NAR 2006»
14 years 9 months ago
oGNM: online computation of structural dynamics using the Gaussian Network Model
An assessment of the equilibrium dynamics of biomolecular systems, and in particular their most cooperativefluctuationsaccessibleundernativestate conditions, is a first step towar...
Lee-Wei Yang, A. J. Rader, Xiong Liu, Christopher ...