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» Toward network data independence
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139
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BMCBI
2005
152views more  BMCBI 2005»
15 years 18 days ago
GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environments
Background: The analysis of biological data is greatly enhanced by existing or emerging databases. Most existing databases, with few exceptions are not designed to easily support ...
S. A. Kirov, X. Peng, E. Baker, D. Schmoyer, B. Zh...
107
Voted
NCA
2008
IEEE
15 years 7 months ago
APART: Low Cost Active Replication for Multi-tier Data Acquisition Systems
This paper proposes APART (A Posteriori Active ReplicaTion), a novel active replication protocol specifically tailored for multi-tier data acquisition systems. Unlike existing ac...
Paolo Romano, Diego Rughetti, Francesco Quaglia, B...
88
Voted
NOMS
2006
IEEE
146views Communications» more  NOMS 2006»
15 years 6 months ago
BGP-Inspect - Extracting Information from Raw BGP Data
— While BGP routing datasets, consisting of raw routing data, are freely available and easy to obtain, extracting any useful information is tedious. Currently, researcher and net...
Dionysus Blazakis, Manish Karir, John S. Baras
BMCBI
2010
175views more  BMCBI 2010»
15 years 25 days ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
106
Voted
IPPS
2002
IEEE
15 years 5 months ago
Parallel Out-of-Core Algorithm for Genome-Scale Enumeration of Metabolic Systemic Pathways
Systemic pathways-oriented approaches to analysis of metabolic networks are effective for small networks but are computationally infeasible for genome scale networks. Current comp...
Nagiza F. Samatova, Al Geist, George Ostrouchov, A...