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BMCBI
2010
214views more  BMCBI 2010»
13 years 6 months ago
AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number
Background: Clustering the information content of large high-dimensional gene expression datasets has widespread application in "omics" biology. Unfortunately, the under...
Aaron M. Newman, James B. Cooper
BMCBI
2008
228views more  BMCBI 2008»
13 years 6 months ago
Adaptive diffusion kernel learning from biological networks for protein function prediction
Background: Machine-learning tools have gained considerable attention during the last few years for analyzing biological networks for protein function prediction. Kernel methods a...
Liang Sun, Shuiwang Ji, Jieping Ye
BMCBI
2010
186views more  BMCBI 2010»
13 years 6 months ago
Knowledge-based biomedical word sense disambiguation: comparison of approaches
Background: Word sense disambiguation (WSD) algorithms attempt to select the proper sense of ambiguous terms in text. Resources like the UMLS provide a reference thesaurus to be u...
Antonio Jimeno Yepes, Alan R. Aronson
CORR
2010
Springer
92views Education» more  CORR 2010»
13 years 6 months ago
Parameterizing by the Number of Numbers
The usefulness of parameterized algorithmics has often depended on what Niedermeier has called, "the art of problem parameterization." In this paper we introduce and expl...
Michael R. Fellows, Serge Gaspers, Frances A. Rosa...
BMCBI
2006
143views more  BMCBI 2006»
13 years 6 months ago
Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms
Background: Microarray technology produces gene expression data on a genomic scale for an endless variety of organisms and conditions. However, this vast amount of information nee...
Rainer König, Gunnar Schramm, Marcus Oswald, ...