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BMCBI
2004
125views more  BMCBI 2004»
14 years 9 months ago
A functional hierarchical organization of the protein sequence space
Background: It is a major challenge of computational biology to provide a comprehensive functional classification of all known proteins. Most existing methods seek recurrent patte...
Noam Kaplan, Moriah Friedlich, Menachem Fromer, Mi...
FUN
2010
Springer
247views Algorithms» more  FUN 2010»
15 years 2 months ago
A Fun Application of Compact Data Structures to Indexing Geographic Data
The way memory hierarchy has evolved in recent decades has opened new challenges in the development of indexing structures in general and spatial access methods in particular. In t...
Nieves R. Brisaboa, Miguel Rodríguez Luaces...
FOCS
2009
IEEE
15 years 1 months ago
Space-Efficient Framework for Top-k String Retrieval Problems
Given a set D = {d1, d2, ..., dD} of D strings of total length n, our task is to report the "most relevant" strings for a given query pattern P. This involves somewhat mo...
Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter
PODS
2006
ACM
216views Database» more  PODS 2006»
15 years 9 months ago
Cache-oblivious string B-trees
B-trees are the data structure of choice for maintaining searchable data on disk. However, B-trees perform suboptimally ? when keys are long or of variable length, ? when keys are...
Michael A. Bender, Martin Farach-Colton, Bradley C...
CL
2000
Springer
14 years 9 months ago
Associative definition of programming languages
Associative Language Descriptions are a recent grammar model, theoretically less powerful than Context Free grammars, but adequate for describing the syntax of programming languag...
Stefano Crespi-Reghizzi, Matteo Pradella, Pierluig...