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RECOMB
2007
Springer
16 years 5 days ago
QNet: A Tool for Querying Protein Interaction Networks
Molecular interaction databases can be used to study the evolution of molecular pathways across species. Querying such pathways is a challenging computational problem, and recent e...
Banu Dost, Tomer Shlomi, Nitin Gupta 0002, Eytan R...
ICIP
2010
IEEE
14 years 9 months ago
Randomized motion estimation
Motion estimation is known to be a non-convex optimization problem. This non-convexity comes from several ambiguities in motion estimation such as the aperture problem, or fast mo...
Sylvain Boltz, Frank Nielsen
CSB
2002
IEEE
221views Bioinformatics» more  CSB 2002»
15 years 4 months ago
DNA Sequence Compression Using the Burrows-Wheeler Transform
-- We investigate off-line dictionary oriented approaches to DNA sequence compression, based on the Burrows-Wheeler Transform (BWT). The preponderance of short repeating patterns i...
Donald A. Adjeroh, Yong Zhang, Amar Mukherjee, Mat...
PODS
1993
ACM
161views Database» more  PODS 1993»
15 years 4 months ago
Blocking for External Graph Searching
In this paper we consider the problem of using disk blocks efficiently in searching graphs that are too large to fit in internal memory. Our model allows a vertex to be represented...
Mark H. Nodine, Michael T. Goodrich, Jeffrey Scott...
COCOON
2007
Springer
15 years 6 months ago
On the Complexity of Finding an Unknown Cut Via Vertex Queries
We investigate the problem of finding an unknown cut through querying vertices of a graph G. Our complexity measure is the number of submitted queries. To avoid some worst cases, ...
Peyman Afshani, Ehsan Chiniforooshan, Reza Dorrigi...