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» Two-phase clustering strategy for gene expression data sets
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ICDE
2006
IEEE
167views Database» more  ICDE 2006»
15 years 10 months ago
Mining Shifting-and-Scaling Co-Regulation Patterns on Gene Expression Profiles
In this paper, we propose a new model for coherent clustering of gene expression data called reg-cluster. The proposed model allows (1) the expression profiles of genes in a clust...
Xin Xu, Ying Lu, Anthony K. H. Tung, Wei Wang 0010
BMCBI
2008
135views more  BMCBI 2008»
14 years 9 months ago
Knowledge-guided multi-scale independent component analysis for biomarker identification
Background: Many statistical methods have been proposed to identify disease biomarkers from gene expression profiles. However, from gene expression profile data alone, statistical...
Li Chen, Jianhua Xuan, Chen Wang, Ie-Ming Shih, Yu...
BIBE
2007
IEEE
151views Bioinformatics» more  BIBE 2007»
14 years 11 months ago
On the Effectiveness of Constraints Sets in Clustering Genes
—In this paper, we have modified a constrained clustering algorithm to perform exploratory analysis on gene expression data using prior knowledge presented in the form of constr...
Erliang Zeng, Chengyong Yang, Tao Li, Giri Narasim...
KDD
2004
ACM
145views Data Mining» more  KDD 2004»
15 years 10 months ago
Mining coherent gene clusters from gene-sample-time microarray data
Extensive studies have shown that mining microarray data sets is important in bioinformatics research and biomedical applications. In this paper, we explore a novel type of genesa...
Daxin Jiang, Jian Pei, Murali Ramanathan, Chun Tan...
SDM
2007
SIAM
98views Data Mining» more  SDM 2007»
14 years 11 months ago
Lattice based Clustering of Temporal Gene-Expression Matrices
Individuals show different cell classes when they are in the different stages of a disease, have different disease subtypes, or have different response to a treatment or envir...
Yang Huang, Martin Farach-Colton