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AMAI
2008
Springer
14 years 9 months ago
Set based logic programming
In a previous paper [BMR01], the authors showed that the mechanism underlying Logic Programming can be extended to handle the situation where the atoms are interpreted as subsets o...
Howard A. Blair, Victor W. Marek, Jeffrey B. Remme...
BMCBI
2010
72views more  BMCBI 2010»
14 years 9 months ago
Potentials 'R'Us web-server for protein energy estimations with coarse-grained knowledge-based potentials
Background: Knowledge-based potentials have been widely used in the last 20 years for fold recognition, protein structure prediction from amino acid sequence, ligand binding, prot...
Yaping Feng, Andrzej Kloczkowski, Robert L. Jernig...
BMCBI
2007
118views more  BMCBI 2007»
14 years 9 months ago
A topological algorithm for identification of structural domains of proteins
Background: Identification of the structural domains of proteins is important for our understanding of the organizational principles and mechanisms of protein folding, and for ins...
Frank Emmert-Streib, Arcady R. Mushegian
BMCBI
2007
97views more  BMCBI 2007»
14 years 9 months ago
Relating destabilizing regions to known functional sites in proteins
Background: Most methods for predicting functional sites in protein 3D structures, rely on information on related proteins and cannot be applied to proteins with no known relative...
Benoit H. Dessailly, Marc F. Lensink, Shoshana J. ...
BMCBI
2006
94views more  BMCBI 2006»
14 years 9 months ago
Novel knowledge-based mean force potential at the profile level
Background: The development and testing of functions for the modeling of protein energetics is an important part of current research aimed at understanding protein structure and f...
Qiwen Dong, Xiaolong Wang, Lei Lin