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» Unbiased pattern detection in microarray data series
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BMCBI
2010
125views more  BMCBI 2010»
14 years 9 months ago
NeatMap - non-clustering heat map alternatives in R
Background: The clustered heat map is the most popular means of visualizing genomic data. It compactly displays a large amount of data in an intuitive format that facilitates the ...
Satwik Rajaram, Yoshi Oono
BMCBI
2008
163views more  BMCBI 2008»
14 years 9 months ago
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...
Frédéric Chalmel, Michael Primig
BMCBI
2008
144views more  BMCBI 2008»
14 years 9 months ago
WGCNA: an R package for weighted correlation network analysis
Background: Correlation networks are increasingly being used in bioinformatics applications. For example, weighted gene co-expression network analysis is a systems biology method ...
Peter Langfelder, Steve Horvath
GRID
2006
Springer
14 years 9 months ago
Snapshot Processing in Streaming Environments
Monitoring and correlation of streaming data from multiple sources is becoming increasingly important in many application areas. Example applications include automated commodities...
Daniel M. Zimmerman, K. Mani Chandy
BMCBI
2010
153views more  BMCBI 2010»
14 years 9 months ago
Metamotifs - a generative model for building families of nucleotide position weight matrices
Background: Development of high-throughput methods for measuring DNA interactions of transcription factors together with computational advances in short motif inference algorithms...
Matias Piipari, Thomas A. Down, Tim J. P. Hubbard