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BMCBI
2006
136views more  BMCBI 2006»
15 years 4 months ago
EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences
Background: Understanding gene regulatory networks has become one of the central research problems in bioinformatics. More than thirty algorithms have been proposed to identify DN...
Jianjun Hu, Yifeng D. Yang, Daisuke Kihara
134
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BMCBI
2010
141views more  BMCBI 2010»
15 years 4 months ago
Computing and visually analyzing mutual information in molecular co-evolution
Background: Selective pressure in molecular evolution leads to uneven distributions of amino acids and nucleotides. In fact one observes correlations among such constituents due t...
Sebastian Bremm, Tobias Schreck, Patrick Boba, Ste...
159
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BMCBI
2008
121views more  BMCBI 2008»
15 years 4 months ago
Modularization of biochemical networks based on classification of Petri net t-invariants
Background: Structural analysis of biochemical networks is a growing field in bioinformatics and systems biology. The availability of an increasing amount of biological data from ...
Eva Grafahrend-Belau, Falk Schreiber, Monika Heine...
BMCBI
2006
101views more  BMCBI 2006»
15 years 4 months ago
Hierarchical modularity of nested bow-ties in metabolic networks
Background: The exploration of the structural topology and the organizing principles of genomebased large-scale metabolic networks is essential for studying possible relations bet...
Jing Zhao, Hong Yu, Jianhua Luo, Zhi-Wei Cao, Yi-X...
121
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SDM
2009
SIAM
175views Data Mining» more  SDM 2009»
16 years 1 months ago
Low-Entropy Set Selection.
Most pattern discovery algorithms easily generate very large numbers of patterns, making the results impossible to understand and hard to use. Recently, the problem of instead sel...
Hannes Heikinheimo, Jilles Vreeken, Arno Siebes, H...