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» Universal Sequencing on a Single Machine
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BMCBI
2006
134views more  BMCBI 2006»
14 years 10 months ago
Application of machine learning in SNP discovery
Background: Single nucleotide polymorphisms (SNP) constitute more than 90% of the genetic variation, and hence can account for most trait differences among individuals in a given ...
Lakshmi K. Matukumalli, John J. Grefenstette, Davi...
89
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JPDC
2007
167views more  JPDC 2007»
14 years 10 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
TPHOL
2009
IEEE
15 years 4 months ago
Psi-calculi in Isabelle
Psi-calculi are extensions of the pi-calculus, accommodating arbitrary nominal datatypes to represent not only data but also communication channels, assertions and conditions, givi...
Jesper Bengtson, Joachim Parrow
BMCBI
2005
100views more  BMCBI 2005»
14 years 10 months ago
Speeding disease gene discovery by sequence based candidate prioritization
Background: Regions of interest identified through genetic linkage studies regularly exceed 30 centimorgans in size and can contain hundreds of genes. Traditionally this number is...
Euan A. Adie, Richard R. Adams, Kathryn L. Evans, ...
BMCBI
2005
155views more  BMCBI 2005»
14 years 10 months ago
Mining protein function from text using term-based support vector machines
Background: Text mining has spurred huge interest in the domain of biology. The goal of the BioCreAtIvE exercise was to evaluate the performance of current text mining systems. We...
Simon B. Rice, Goran Nenadic, Benjamin J. Stapley