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BMCBI
2010
167views more  BMCBI 2010»
14 years 10 months ago
Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
Background: Knowledge of transcription factor-DNA binding patterns is crucial for understanding gene transcription. Numerous DNA-binding proteins are annotated as transcription fa...
Denitsa Alamanova, Philip Stegmaier, Alexander E. ...
WWW
2007
ACM
15 years 10 months ago
Csurf: a context-driven non-visual web-browser
Web sites are designed for graphical mode of interaction. Sighted users can "cut to the chase" and quickly identify relevant information in Web pages. On the contrary, i...
Jalal Mahmud, Yevgen Borodin, I. V. Ramakrishnan
JEI
2010
171views more  JEI 2010»
14 years 8 months ago
Most apparent distortion: full-reference image quality assessment and the role of strategy
The mainstream approach to image quality assessment has centered around accurately modeling the single most relevant strategy employed by the human visual system (HVS) when judging...
Eric C. Larson, Damon M. Chandler
ICSE
2008
IEEE-ACM
15 years 10 months ago
Predicting accurate and actionable static analysis warnings: an experimental approach
Static analysis tools report software defects that may or may not be detected by other verification methods. Two challenges complicating the adoption of these tools are spurious f...
Joseph R. Ruthruff, John Penix, J. David Morgentha...
QEST
2009
IEEE
15 years 4 months ago
Recent Extensions to Traviando
—Traviando is a trace analyzer and visualizer for simulation traces of discrete event dynamic systems. In this paper, we briefly outline recent extensions of Traviando towards a...
Peter Kemper