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» Use Cases, Actions, and Roles
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MODELLIERUNG
2001
15 years 3 months ago
Dependency Charts as a Means to Model Inter-Scenario Dependencies
: Scenarios/use cases have gained wide-spread use over the last couple of years. In software engineering they are mainly used to capture requirements and specify a system. Many sof...
Johannes Ryser, Martin Glinz
BMCBI
2010
189views more  BMCBI 2010»
15 years 2 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
BMCBI
2010
164views more  BMCBI 2010»
15 years 2 months ago
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be...
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geer...
127
Voted
BMCBI
2007
115views more  BMCBI 2007»
15 years 1 months ago
Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets
Background: In structural genomics, an important goal is the detection and classification of protein–protein interactions, given the structures of the interacting partners. We h...
Guillaume Launay, Raul Mendez, Shoshana J. Wodak, ...
127
Voted
BMCBI
2005
114views more  BMCBI 2005»
15 years 1 months ago
Extension of Lander-Waterman theory for sequencing filtered DNA libraries
Background: The degree to which conventional DNA sequencing techniques will be successful for highly repetitive genomes is unclear. Investigators are therefore considering various...
Michael C. Wendl, W. Bradley Barbazuk