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174
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CP
2003
Springer
15 years 8 months ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
DEBS
2008
ACM
15 years 5 months ago
A framework for performance evaluation of complex event processing systems
Several new Complex Event Processing (CEP) engines have been recently released, many of which are intended to be used in performance sensitive scenarios - like fraud detection, tr...
Marcelo R. N. Mendes, Pedro Bizarro, Paulo Marques
BMCBI
2008
154views more  BMCBI 2008»
15 years 3 months ago
Extension of the COG and arCOG databases by amino acid and nucleotide sequences
Background: The current versions of the COG and arCOG databases, both excellent frameworks for studies in comparative and functional genomics, do not contain the nucleotide sequen...
Florian Meereis, Michael Kaufmann
BMCBI
2011
14 years 9 months ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...
126
Voted
DATE
2008
IEEE
153views Hardware» more  DATE 2008»
15 years 9 months ago
An Optimized Message Passing Framework for Parallel Implementation of Signal Processing Applications
Novel reconfigurable computing platforms enable efficient realizations of complex signal processing applications by allowing exploitation of parallelization resulting in high thro...
Sankalita Saha, Jason Schlessman, Sebastian Puthen...