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» Using Multiple Alignments to Improve Gene Prediction
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BMCBI
2007
140views more  BMCBI 2007»
15 years 5 months ago
Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure in
Background: Structural properties of proteins such as secondary structure and solvent accessibility contribute to three-dimensional structure prediction, not only in the ab initio...
Gianluca Pollastri, Alberto J. M. Martin, Catherin...
BMCBI
2010
103views more  BMCBI 2010»
15 years 5 months ago
Nonparametric methods for the analysis of single-color pathogen microarrays
Background: The analysis of oligonucleotide microarray data in pathogen surveillance and discovery is a challenging task. Target template concentration, nucleic acid integrity, an...
Omar J. Jabado, Sean Conlan, P. Lan Quan, Jeffrey ...
ECML
2007
Springer
15 years 11 months ago
Neighborhood-Based Local Sensitivity
Abstract. We introduce a nonparametric model for sensitivity estimation which relies on generating points similar to the prediction point using its k nearest neighbors. Unlike most...
Paul N. Bennett
BMCBI
2006
179views more  BMCBI 2006»
15 years 5 months ago
Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression
Background: In this study, we present a robust and reliable computational method for tag-togene assignment in serial analysis of gene expression (SAGE). The method relies on curre...
Rodrigo Malig, Cristian Varela, Eduardo Agosin, Fr...
BMCBI
2006
242views more  BMCBI 2006»
15 years 5 months ago
Predicting residue-wise contact orders in proteins by support vector regression
Background: The residue-wise contact order (RWCO) describes the sequence separations between the residues of interest and its contacting residues in a protein sequence. It is a ne...
Jiangning Song, Kevin Burrage