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IPPS
2006
IEEE
15 years 8 months ago
Bio-sequence database scanning on a GPU
Protein sequences with unknown functionality are often compared to a set of known sequences to detect functional similarities. Efficient dynamic programming algorithms exist for t...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Sc...
PDP
2008
IEEE
15 years 9 months ago
Distributed Sparse Spatial Selection Indexes
Searching for similar objects in metric-space databases can be efficiently solved by using index data structures. A number of alternative sequential indexes have been proposed in...
Veronica Gil Costa, Mauricio Marín
BMCBI
2008
125views more  BMCBI 2008»
15 years 2 months ago
XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data
Background: Advances in automated DNA sequencing technology have accelerated the generation of metagenomic DNA sequences, especially environmental ribosomal RNA gene (rDNA) sequen...
Daniel N. Frank
116
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RECOMB
2007
Springer
16 years 2 months ago
QNet: A Tool for Querying Protein Interaction Networks
Molecular interaction databases can be used to study the evolution of molecular pathways across species. Querying such pathways is a challenging computational problem, and recent e...
Banu Dost, Tomer Shlomi, Nitin Gupta 0002, Eytan R...
BMCBI
2008
140views more  BMCBI 2008»
15 years 2 months ago
FUNYBASE: a FUNgal phYlogenomic dataBASE
Background: The increasing availability of fungal genome sequences provides large numbers of proteins for evolutionary and phylogenetic analyses. However the heterogeneity of data...
Sylvain Marthey, Gabriela Aguileta, Françoi...