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» Using Parallel Algorithms for Searching Molecular Sequence D...
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77
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BMCBI
2006
116views more  BMCBI 2006»
14 years 10 months ago
MICA: desktop software for comprehensive searching of DNA databases
Background: Molecular biologists work with DNA databases that often include entire genomes. A common requirement is to search a DNA database to find exact matches for a nondegener...
William A. Stokes, Benjamin S. Glick
130
Voted
BMCBI
2011
14 years 1 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
106
Voted
CF
2007
ACM
15 years 2 months ago
Parallel genomic sequence-search on a massively parallel system
In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequencesearch algorithms to search these databases contin...
Oystein Thorsen, Brian E. Smith, Carlos P. Sosa, K...
IPPS
2002
IEEE
15 years 3 months ago
Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client Environments
This paper is concerned with the efficient execution of multiplesequence alignmentmethodsin a multipleclientenvironment. Multiple sequence alignment (MSA) is a computationally ex...
Ümit V. Çatalyürek, Eric Stahlber...
VISUALIZATION
1995
IEEE
15 years 1 months ago
Visualization of Biological Sequence Similarity Search Results
Biological sequence similarity analysis presents visualization challenges, primarily because of the massive amounts of discrete, multi-dimensional data. Genomic data generated by ...
Ed Huai-hsin Chi, Phillip Barry, Elizabeth Shoop, ...