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» Using Partial Reference Alignments to Align Ontologies
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SIGMOD
2011
ACM
150views Database» more  SIGMOD 2011»
14 years 2 months ago
WHAM: a high-throughput sequence alignment method
Over the last decade the cost of producing genomic sequences has dropped dramatically due to the current so called “next-gen” sequencing methods. However, these next-gen seque...
Yinan Li, Allison Terrell, Jignesh M. Patel
BMCBI
2007
126views more  BMCBI 2007»
14 years 11 months ago
Multiple non-collinear TF-map alignments of promoter regions
Background: The analysis of the promoter sequence of genes with similar expression patterns is a basic tool to annotate common regulatory elements. Multiple sequence alignments ar...
Enrique Blanco, Roderic Guigó, Xavier Messe...
69
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GLOBECOM
2009
IEEE
15 years 6 months ago
Interference Subspace Tracking for Network Interference Alignment in Cellular Systems
— In this paper, a practical solution to implement the distributed interference alignment (IA) algorithm of [1] in a cellular communication system is proposed. In the training pe...
Bo Niu, Alexander M. Haimovich
BMCBI
2010
137views more  BMCBI 2010»
14 years 12 months ago
BS Seeker: precise mapping for bisulfite sequencing
Background: Bisulfite sequencing using next generation sequencers yields genome-wide measurements of DNA methylation at single nucleotide resolution. Traditional aligners are not ...
Pao-Yang Chen, Shawn Cokus, Matteo Pellegrini
JPDC
2007
167views more  JPDC 2007»
14 years 11 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...