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BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
15 years 3 months ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci
72
Voted
BMCBI
2007
121views more  BMCBI 2007»
14 years 9 months ago
Predicting zinc binding at the proteome level
Background: Metalloproteins are proteins capable of binding one or more metal ions, which may be required for their biological function, for regulation of their activities or for ...
Andrea Passerini, Claudia Andreini, Sauro Menchett...
PPOPP
2010
ACM
14 years 8 months ago
Analyzing lock contention in multithreaded applications
Many programs exploit shared-memory parallelism using multithreading. Threaded codes typically use locks to coordinate access to shared data. In many cases, contention for locks r...
Nathan R. Tallent, John M. Mellor-Crummey, Allan P...
IJWMC
2010
103views more  IJWMC 2010»
14 years 7 months ago
Programmable agents for efficient topology formation of Bluetooth scatternets
The past few years have seen a burst in public interest and widespread use of portable electronic devices featuring both mature and emerging technologies for wireless communication...
Sergio González-Valenzuela, Son T. Vuong, V...
ICALP
2009
Springer
15 years 10 months ago
A Distributed and Oblivious Heap
This paper shows how to build and maintain a distributed heap which we call SHELL. In contrast to standard heaps, our heap is oblivious in the sense that its structure only depends...
Christian Scheideler, Stefan Schmid