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» Using constraint programming for lattice protein folding
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CSCLP
2004
Springer
15 years 3 months ago
A Note on Bilattices and Open Constraint Programming
Abstract. We propose to use bilattice as a constraint valuation structure in order to represent truth and belief at the same time. A bilattice is a set which owns two lattices orde...
Arnaud Lallouet
BMCBI
2002
137views more  BMCBI 2002»
14 years 9 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
BMCBI
2007
102views more  BMCBI 2007»
14 years 10 months ago
FlexOracle: predicting flexible hinges by identification of stable domains
Background: Protein motions play an essential role in catalysis and protein-ligand interactions, but are difficult to observe directly. A substantial fraction of protein motions i...
Samuel Flores, Mark Gerstein
BMCBI
2008
135views more  BMCBI 2008»
14 years 10 months ago
Functional site prediction selects correct protein models
Background: The prediction of protein structure can be facilitated by the use of constraints based on a knowledge of functional sites. Without this information it is still possibl...
Vijayalakshmi Chelliah, William R. Taylor
BMCBI
2007
137views more  BMCBI 2007»
14 years 10 months ago
Bayesian refinement of protein functional site matching
Background: Matching functional sites is a key problem for the understanding of protein function and evolution. The commonly used graph theoretic approach, and other related appro...
Kanti V. Mardia, Vysaul B. Nyirongo, Peter J. Gree...