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» Using context to improve protein domain identification
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BMCBI
2006
124views more  BMCBI 2006»
14 years 10 months ago
HybGFS: a hybrid method for genome-fingerprint scanning
Background: Protein identification based on mass spectrometry (MS) has previously been performed using peptide mass fingerprinting (PMF) or tandem MS (MS/MS) database searching. H...
Kosaku Shinoda, Nozomu Yachie, Takeshi Masuda, Nao...
BMCBI
2008
110views more  BMCBI 2008»
14 years 10 months ago
Enhancing the prediction of protein pairings between interacting families using orthology information
Background: It has repeatedly been shown that interacting protein families tend to have similar phylogenetic trees. These similarities can be used to predicting the mapping betwee...
José M. G. Izarzugaza, David de Juan, Carle...
CIKM
2008
Springer
14 years 12 months ago
Using the current browsing context to improve search relevance
In this paper, we investigate the problem of improving the relevance of a Web search engine by adapting it to the dynamic needs of the user. We examine a representative case of su...
Mandar Rahurkar, Silviu Cucerzan
GCB
1998
Springer
78views Biometrics» more  GCB 1998»
15 years 2 months ago
Computational approaches to identify Leucine Zippers
The leucine zipper is a dimerization domain occurring mostly in regulatory and thus in many oncogenic proteins. The leucine repeat in the sequence has been traditionally used for ...
Erich Bornberg-Bauer
BMCBI
2006
110views more  BMCBI 2006»
14 years 10 months ago
Design of a combinatorial DNA microarray for protein-DNA interaction studies
Background: Discovery of precise specificity of transcription factors is an important step on the way to understanding the complex mechanisms of gene regulation in eukaryotes. Rec...
Julian Mintseris, Michael B. Eisen