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» Using context to improve protein domain identification
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NAR
2002
125views more  NAR 2002»
14 years 9 months ago
ASTRAL compendium enhancements
The ASTRAL compendium provides several databases and tools to aid in the analysis of protein structures, particularly through the use of their sequences. It is partially derived f...
John-Marc Chandonia, Nigel S. Walker, Loredana Lo ...
ICRA
2009
IEEE
151views Robotics» more  ICRA 2009»
14 years 7 months ago
Surface identification using simple contact dynamics for mobile robots
This paper describes an approach to surface identification in the context of mobile robotics, applicable to supervised and unsupervised learning. The identification is based on ana...
Philippe Giguère, Gregory Dudek
NAR
2008
107views more  NAR 2008»
14 years 10 months ago
ISPIDER Central: an integrated database web-server for proteomics
Despite the growing volumes of proteomic data, integration of the underlying results remains problematic owing to differences in formats, data captured, protein accessions and ser...
Jennifer A. Siepen, Khalid Belhajjame, Julian N. S...
BCB
2010
140views Bioinformatics» more  BCB 2010»
14 years 5 months ago
Guiding belief propagation using domain knowledge for protein-structure determination
A major bottleneck in high-throughput protein crystallography is producing protein-structure models from an electrondensity map. In previous work, we developed Acmi, a probabilist...
Ameet Soni, Craig A. Bingman, Jude W. Shavlik
BMCBI
2007
166views more  BMCBI 2007»
14 years 10 months ago
Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics
Background: In proteomic analysis, MS/MS spectra acquired by mass spectrometer are assigned to peptides by database searching algorithms such as SEQUEST. The assignations of pepti...
Xinning Jiang, Xiaogang Jiang, Guanghui Han, Mingl...