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» Using context to improve protein domain identification
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KER
2008
106views more  KER 2008»
14 years 10 months ago
Personalized information retrieval based on context and ontological knowledge
Context modeling has been long acknowledged as a key aspect in a wide variety of problem domains. In this paper we focus on the combination of contextualization and personalizatio...
Phivos Mylonas, David Vallet, Pablo Castells, Miri...
BMCBI
2007
133views more  BMCBI 2007»
14 years 10 months ago
Semantic integration to identify overlapping functional modules in protein interaction networks
Background: The systematic analysis of protein-protein interactions can enable a better understanding of cellular organization, processes and functions. Functional modules can be ...
Young-Rae Cho, Woochang Hwang, Murali Ramanathan, ...
HICSS
2005
IEEE
152views Biometrics» more  HICSS 2005»
15 years 3 months ago
Knowledge Ontology: A Method for Empirical Identification of 'As-Is' Contextual Knowledge
In this paper, we consider existing approaches to ontology definition and validation. Popular techniques include the use of domain experts or reliance on formal logic. We consider...
Theresa Edgington, T. S. Raghu, Ajay S. Vinze
NAR
2011
207views Computer Vision» more  NAR 2011»
14 years 25 days ago
PSORTdb - an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea
The subcellular localization (SCL) of a microbial protein provides clues about its function, its suitability as a drug, vaccine or diagnostic target and aids experimental design. ...
Nancy Y. Yu, Matthew R. Laird, Cory Spencer, Fiona...
BMCBI
2007
141views more  BMCBI 2007»
14 years 10 months ago
Using structural motif descriptors for sequence-based binding site prediction
Background: Many protein sequences are still poorly annotated. Functional characterization of a protein is often improved by the identification of its interaction partners. Here, ...
Andreas Henschel, Christof Winter, Wan Kyu Kim, Mi...