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163
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RECOMB
2006
Springer
16 years 3 months ago
Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer
Prokaryotic organisms share genetic material across species boundaries by means of a process known as horizontal gene transfer (HGT). Detecting this process bears great significanc...
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nak...
146
Voted
RECOMB
2006
Springer
16 years 3 months ago
Simulating Protein Motions with Rigidity Analysis
Abstract. Protein motions, ranging from molecular flexibility to largescale conformational change, play an essential role in many biochemical processes. Despite the explosion in ou...
Shawna L. Thomas, Xinyu Tang, Lydia Tapia, Nancy M...
125
Voted
RECOMB
2002
Springer
16 years 3 months ago
A new approach to analyzing gene expression time series data
We present algorithms for time-series gene expression analysis that permit the principled estimation of unobserved timepoints, clustering, and dataset alignment. Each expression p...
Ziv Bar-Joseph, Georg Gerber, David K. Gifford, To...
STOC
2006
ACM
159views Algorithms» more  STOC 2006»
16 years 3 months ago
Learning a circuit by injecting values
d Abstract] Dana Angluin James Aspnes Jiang Chen Yinghua Wu We propose a new model for exact learning of acyclic circuits using experiments in which chosen values may be assigned ...
Dana Angluin, James Aspnes, Jiang Chen, Yinghua Wu
OSDI
2006
ACM
16 years 3 months ago
From Uncertainty to Belief: Inferring the Specification Within
Automatic tools for finding software errors require a set of specifications before they can check code: if they do not know what to check, they cannot find bugs. This paper presen...
Ted Kremenek, Paul Twohey, Godmar Back, Andrew Y. ...
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