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» Using probabilistic model checking in systems biology
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SIGSOFT
2007
ACM
16 years 15 days ago
Mining API patterns as partial orders from source code: from usage scenarios to specifications
A software system interacts with third-party libraries through various APIs. Using these library APIs often needs to follow certain usage patterns. Furthermore, ordering rules (sp...
Mithun Acharya, Tao Xie, Jian Pei, Jun Xu
BMCBI
2006
158views more  BMCBI 2006»
14 years 11 months ago
Parallelization of multicategory support vector machines (PMC-SVM) for classifying microarray data
Background: Multicategory Support Vector Machines (MC-SVM) are powerful classification systems with excellent performance in a variety of data classification problems. Since the p...
Chaoyang Zhang, Peng Li, Arun Rajendran, Youping D...
SIGIR
2005
ACM
15 years 5 months ago
An application of text categorization methods to gene ontology annotation
This paper describes an application of IR and text categorization methods to a highly practical problem in biomedicine, specifically, Gene Ontology (GO) annotation. GO annotation...
Kazuhiro Seki, Javed Mostafa
100
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BMCBI
2008
89views more  BMCBI 2008»
14 years 12 months ago
Increasing the efficiency of bacterial transcription simulations: When to exclude the genome without loss of accuracy
Background: Simulating the major molecular events inside an Escherichia coli cell can lead to a very large number of reactions that compose its overall behaviour. Not only should ...
Marco A. J. Iafolla, Guang Qiang Dong, David R. Mc...
CONNECTION
2006
172views more  CONNECTION 2006»
14 years 11 months ago
Temporal sequence detection with spiking neurons: towards recognizing robot language instructions
We present an approach for recognition and clustering of spatio temporal patterns based on networks of spiking neurons with active dendrites and dynamic synapses. We introduce a n...
Christo Panchev, Stefan Wermter