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» Using probabilistic model checking in systems biology
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BMCBI
2008
132views more  BMCBI 2008»
14 years 12 months ago
The Average Mutual Information Profile as a Genomic Signature
Background: Occult organizational structures in DNA sequences may hold the key to understanding functional and evolutionary aspects of the DNA molecule. Such structures can also p...
Mark Bauer, Sheldon M. Schuster, Khalid Sayood
CAV
1998
Springer
175views Hardware» more  CAV 1998»
15 years 4 months ago
An ACL2 Proof of Write Invalidate Cache Coherence
As a pedagogical exercise in ACL2, we formalize and prove the correctness of a write invalidate cache scheme. In our formalization, an arbitrary number of processors, each with its...
J. Strother Moore
CGF
2006
202views more  CGF 2006»
14 years 11 months ago
GPU-based Collision Detection for Deformable Parameterized Surfaces
Based on the potential of current programmable GPUs, recently several approaches were developed that use the GPU to calculate deformations of surfaces like the folding of cloth or...
Alexander Greß, Michael Guthe, Reinhard Klei...
SIAMCOMP
2002
98views more  SIAMCOMP 2002»
14 years 11 months ago
Self-Stabilizing Symmetry Breaking in Constant Space
abstract Alain Mayer Yoram Ofeky Rafail Ostrovskyz Moti Yungx We investigate the problem of self-stabilizing round-robin token management scheme on an anonymous bidirectional ring...
Alain J. Mayer, Rafail Ostrovsky, Yoram Ofek, Moti...
ICPPW
2009
IEEE
14 years 9 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...