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» Using sampling methods to improve binding site predictions
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114
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BIBM
2008
IEEE
113views Bioinformatics» more  BIBM 2008»
15 years 7 months ago
Towards Site-Based Protein Functional Annotations
Abstract—The exact relationship between protein active centers and protein functions is unclear even after decades of intensive study. To improve the functional prediction abilit...
Seak Fei Lei, Jun Huan
107
Voted
BMCBI
2008
172views more  BMCBI 2008»
15 years 18 days ago
Classification of drug molecules considering their IC50 values using mixed-integer linear programming based hyper-boxes method
Background: A priori analysis of the activity of drugs on the target protein by computational approaches can be useful in narrowing down drug candidates for further experimental t...
Pelin Armutlu, Muhittin Emre Ozdemir, Fadime Ü...
106
Voted
ISSRE
2005
IEEE
15 years 6 months ago
A Novel Method for Early Software Quality Prediction Based on Support Vector Machine
The software development process imposes major impacts on the quality of software at every development stage; therefore, a common goal of each software development phase concerns ...
Fei Xing, Ping Guo, Michael R. Lyu
ICML
2007
IEEE
16 years 1 months ago
An integrated approach to feature invention and model construction for drug activity prediction
We present a new machine learning approach for 3D-QSAR, the task of predicting binding affinities of molecules to target proteins based on 3D structure. Our approach predicts bind...
David Page, Jesse Davis, Soumya Ray, Vítor ...
100
Voted
BMCBI
2007
152views more  BMCBI 2007»
15 years 18 days ago
Bioinformatic identification of novel putative photoreceptor specific cis-elements
Background: Cell specific gene expression is largely regulated by different combinations of transcription factors that bind cis-elements in the upstream promoter sequence. However...
Charles G. Danko, Vera A. McIlvain, Maochun Qin, B...