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» Using sampling methods to improve binding site predictions
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BMCBI
2006
128views more  BMCBI 2006»
15 years 15 days ago
Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments
Background: High density oligonucleotide tiling arrays are an effective and powerful platform for conducting unbiased genome-wide studies. The ab initio probe selection method emp...
Srinka Ghosh, Heather A. Hirsch, Edward A. Sekinge...
106
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BIOCOMP
2006
15 years 1 months ago
Marker Gene Selection Evaluation in Brain Tumor Patients Using Parallel Coordinates
Based on microarray gene expression datasets, many statistical methods have been proposed to locate the significant differentially expressed genes (marker genes) among different sa...
Atiq Islam, Khan M. Iftekharuddin, David J. Russom...
BMCBI
2007
133views more  BMCBI 2007»
15 years 17 days ago
MATLIGN: a motif clustering, comparison and matching tool
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
Matti Kankainen, Ari Löytynoja
ACL
2006
15 years 1 months ago
Learning to Say It Well: Reranking Realizations by Predicted Synthesis Quality
This paper presents a method for adapting a language generator to the strengths and weaknesses of a synthetic voice, thereby improving the naturalness of synthetic speech in a spo...
Crystal Nakatsu, Michael White
115
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COMPUTING
2006
130views more  COMPUTING 2006»
15 years 15 days ago
Dynamic Data Driven Simulations in Stochastic Environments
To improve the predictions in dynamic data driven simulations (DDDAS) for subsurface problems, we propose the permeability update based on observed measurements. Based on measurem...
Craig C. Douglas, Yalchin Efendiev, Richard E. Ewi...