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CORR
2010
Springer
87views Education» more  CORR 2010»
15 years 3 days ago
Using Evolution Strategy with Meta-models for Well Placement Optimization
Optimum implementation of non-conventional wells allows us to increase considerably hydrocarbon recovery. By considering the high drilling cost and the potential improvement in we...
Zyed Bouzarkouna, Didier Yu Ding, Anne Auger
JCP
2007
96views more  JCP 2007»
15 years 1 months ago
A Language to Enable Distributed Simulation of Extended Queueing Networks
— Distributed simulators are increasingly being used for their intrinsic advantages in terms of reusability, fault tolerance, performance, and geographic distribution. The develo...
Daniele Gianni, Andrea D'Ambrogio
JCC
2006
82views more  JCC 2006»
15 years 1 months ago
Monte Carlo simulations of biomolecules: The MC module in CHARMM
: We describe the implementation of a general and flexible Monte Carlo (MC) module for the program CHARMM, which is used widely for modeling biomolecular systems with empirical ene...
Jie Hu, Ao Ma, Aaron R. Dinner
BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
15 years 8 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang
BMCBI
2010
149views more  BMCBI 2010»
15 years 1 months ago
RuleMonkey: software for stochastic simulation of rule-based models
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
Joshua Colvin, Michael I. Monine, Ryan N. Gutenkun...