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BMCBI
2005
97views more  BMCBI 2005»
15 years 5 months ago
Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data
Background: As genomes evolve after speciation, gene content, coding sequence, gene expression, and splicing all diverge with time from ancestors with close relatives. A minimum e...
Roald Rossnes, Ingvar Eidhammer, David A. Liberles
BMCBI
2005
75views more  BMCBI 2005»
15 years 5 months ago
Prediction of a common structural scaffold for proteasome lid, COP9-signalosome and eIF3 complexes
Background: The 'lid' subcomplex of the 26S proteasome and the COP9 signalosome (CSN complex) share a common architecture consisting of six subunits harbouring a so-call...
Hartmut Scheel, Kay Hofmann
TKDE
2008
171views more  TKDE 2008»
15 years 5 months ago
Efficient Similarity Search in Nonmetric Spaces with Local Constant Embedding
Similarity-based search has been a key factor for many applications such as multimedia retrieval, data mining, Web search and retrieval, and so on. There are two important issues r...
Lei Chen 0002, Xiang Lian
TKDE
2008
153views more  TKDE 2008»
15 years 5 months ago
Discovering Frequent Agreement Subtrees from Phylogenetic Data
We study a new data mining problem concerning the discovery of frequent agreement subtrees (FASTs) from a set of phylogenetic trees. A phylogenetic tree, or phylogeny, is an unorde...
Sen Zhang, Jason Tsong-Li Wang
BMCBI
2005
107views more  BMCBI 2005»
15 years 5 months ago
ProbeMaker: an extensible framework for design of sets of oligonucleotide probes
Background: Procedures for genetic analyses based on oligonucleotide probes are powerful tools that can allow highly parallel investigations of genetic material. Such procedures r...
Johan Stenberg, Mats Nilsson, Ulf Landegren
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