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JMLR
2012
13 years 5 days ago
Active Clustering of Biological Sequences
Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model...
Konstantin Voevodski, Maria-Florina Balcan, Heiko ...
ISVC
2009
Springer
15 years 2 months ago
Visualization of the Molecular Dynamics of Polymers and Carbon Nanotubes
Abstract. Research domains that deal with complex molecular systems often employ computer-based thermodynamics simulations to study molecular interactions and investigate phenomena...
Sidharth Thakur, Syamal Tallury, Melissa A. Pasqui...
PODS
2004
ACM
120views Database» more  PODS 2004»
15 years 10 months ago
Locally Consistent Transformations and Query Answering in Data Exchange
Data exchange is the problem of taking data structured under a source schema and creating an instance of a target schema. Given a source instance, there may be many solutions ? ta...
Marcelo Arenas, Pablo Barceló, Ronald Fagin...
SIGMOD
2008
ACM
142views Database» more  SIGMOD 2008»
15 years 10 months ago
Cost-based variable-length-gram selection for string collections to support approximate queries efficiently
Approximate queries on a collection of strings are important in many applications such as record linkage, spell checking, and Web search, where inconsistencies and errors exist in...
Xiaochun Yang, Bin Wang, Chen Li
BMCBI
2006
172views more  BMCBI 2006»
14 years 9 months ago
BioWarehouse: a bioinformatics database warehouse toolkit
Background: This article addresses the problem of interoperation of heterogeneous bioinformatics databases. Results: We introduce BioWarehouse, an open source toolkit for construc...
Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Pr...