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» Visual software tools for bioinformatics
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SIGMOD
2010
ACM
207views Database» more  SIGMOD 2010»
15 years 4 months ago
iTuned: a tool for configuring and visualizing database parameters
iTuned is a tool that takes a SQL workload as input and recommends good settings for database configuration parameters such as buffer pool sizes, multi-programming level, and numb...
Vamsidhar Thummala, Shivnath Babu
BMCBI
2008
148views more  BMCBI 2008»
15 years 4 months ago
StAR: a simple tool for the statistical comparison of ROC curves
Background: As in many different areas of science and technology, most important problems in bioinformatics rely on the proper development and assessment of binary classifiers. A ...
Ismael A. Vergara, Tomás Norambuena, Evandr...
BIBM
2008
IEEE
144views Bioinformatics» more  BIBM 2008»
15 years 11 months ago
PhyQL: A Web-Based Phylogenetic Visual Query Engine
Biologists are often interested to query published phylogenetic data for research purposes. PhyQL, a web-based visual phylogenetic query engine, can be quite useful on this regard...
Shahriyar Hossain, Munirul Islam, Jesmin, Hasan M....
BIBE
2006
IEEE
112views Bioinformatics» more  BIBE 2006»
15 years 10 months ago
Finding Correlations in Functionally Equivalent Proteins by Integrating Automated and Visual Data Exploration
The analysis of alignments of functionally equivalent proteins can reveal regularities such as correlated positions or residue patterns which are important to ensure a specific f...
Daniel A. Keim, Daniela Oelke, Royal Truman, Klaus...
CSB
2005
IEEE
126views Bioinformatics» more  CSB 2005»
15 years 10 months ago
Visualization of Logic Analysis of Phylogenetic Profiles (LAPP)
Recently Bowers et al. [1] analyzed triplet logic relationships among 4873 Clusters of Orthologous Groups (COGS) from 67 fully sequenced organisms by calculating how well logic re...
Kay A. Robbins, Li Zhao