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    BMCBI
    2007
    162views more  BMCBI 2007»
    Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
    15 years 1 months ago
    Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
    Download  www.biomedcentral.com
    Background: Construction and interpretation of phylogenetic trees has been a major research topic for understanding the evolution of genes. Increases in sequence data and complexi...
    Namshin Kim, Christopher Lee
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    NAR
    2008
    119views more  NAR 2008»
    TreeFam: 2008 Update
    15 years 1 months ago
    TreeFam: 2008 Update
    Download  www.ucc.ie
    TreeFam (http://www.treefam.org) was developed to provide curated phylogenetic trees for all animal gene families, as well as orthologue and paralogue assignments. Release 4.0 of ...
    Jue Ruan, Heng Li, Zhongzhong Chen, Avril Coghlan,...
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    CSB
    2005
    IEEE
    130views Bioinformatics» more  CSB 2005»
    TreeRefiner: A Tool for Refining a Multiple Alignment on a Phylogenetic Tree
    15 years 7 months ago
    TreeRefiner: A Tool for Refining a Multiple Alignment on a Phylogenetic Tree
    Download  ai.stanford.edu
    We present TreeRefiner, a tool for refining multiple alignments of biological sequences. Given a multiple alignment, a phylogenetic tree, and scoring parameters as input, TreeRefi...
    Aswath Manohar, Serafim Batzoglou
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    NAR
    2006
    91views more  NAR 2006»
    TreeFam: a curated database of phylogenetic trees of animal gene families
    15 years 1 months ago
    TreeFam: a curated database of phylogenetic trees of animal gene families
    Download  www.ucc.ie
    TreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary his20 tory of all anim...
    Heng Li, Avril Coghlan, Jue Ruan, Lachlan James M....
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    BIOINFORMATICS
    2007
    61views more  BIOINFORMATICS 2007»
    Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
    15 years 1 months ago
    Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
    Download  itol.embl.de
    Ivica Letunic, Peer Bork
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