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BIOINFORMATICS
2008
106views more  BIOINFORMATICS 2008»
15 years 2 months ago
Interactive visualization software for exploring phylogenetic trees and clades
The Summary Tree Explorer (STE) is a Java application for interactively exploring sets of phylogenetic trees using two coupled representations: a node-and-link diagram and a textu...
Mark Derthick
ALGORITHMICA
1999
87views more  ALGORITHMICA 1999»
15 years 1 months ago
The Performance of Neighbor-Joining Methods of Phylogenetic Reconstruction
We analyze the performance of the popular class of neighbor-joining methods of phylogeny reconstruction. In particular, we find conditions under which these methods will determine ...
Kevin Atteson
106
Voted
ACIIDS
2010
IEEE
153views Database» more  ACIIDS 2010»
15 years 3 months ago
Visualization of Influenza Protein Segment HA in Manifold Space
Due to the lateral gene transfer, the phylogenetic tree may be inadequate for representing the evolution of Influenza A (H1N1) virus. This work employs the distance invariant manif...
Cheng-Yuan Liou, Wei-Chen Cheng
98
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COMBINATORICS
2006
102views more  COMBINATORICS 2006»
15 years 1 months ago
Identifying X-Trees with Few Characters
Previous work has shown the perhaps surprising result that, for any binary phylogenetic tree T , there is a set of four characters that define T . Here we deal with the general ca...
Magnus Bordewich, Charles Semple, Mike A. Steel
BMCBI
2011
14 years 5 months ago
PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus ge
Background: Results of phylogenetic analysis are often visualized as phylogenetic trees. Such a tree can typically only include up to a few hundred sequences. When more than a few...
Jiajie Zhang, Amir Madany Mamlouk, Thomas Martinet...