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BIBM
2008
IEEE
134views Bioinformatics» more  BIBM 2008»
15 years 8 months ago
New Approaches to Compare Phylogenetic Search Heuristics
We present new and novel insights into the behavior of two maximum parsimony heuristics for building evolutionary trees of different sizes. First, our results show that the heuris...
Seung-Jin Sul, Suzanne Matthews, Tiffani L. Willia...
ICANN
2010
Springer
15 years 2 months ago
Visualising Clusters in Self-Organising Maps with Minimum Spanning Trees
Abstract. The Self-Organising Map (SOM) is a well-known neuralnetwork model that has successfully been used as a data analysis tool in many different domains. The SOM provides a to...
Rudolf Mayer, Andreas Rauber
JCB
2007
92views more  JCB 2007»
15 years 1 months ago
Neighbor Joining Algorithms for Inferring Phylogenies via LCA Distances
Reconstructing phylogenetic trees efficiently and accurately from distance estimates is an ongoing challenge in computational biology from both practical and theoretical consider...
Ilan Gronau, Shlomo Moran
129
Voted
ISMB
2003
15 years 3 months ago
Deriving phylogenetic trees from the similarity analysis of metabolic pathways
Comparative analysis of metabolic pathways in different genomes can give insights into the understanding of evolutionary and organizational relationships among species. This type ...
Maureen Heymans, Ambuj K. Singh
114
Voted
CIBCB
2005
IEEE
15 years 7 months ago
Cooperative Rec-I-DCM3: A Population-Based Approach for Reconstructing Phylogenies
Abstract— In this paper, we study the use of cooperation as a technique for designing faster algorithms for reconstructing phylogenetic trees. Our focus is on the use of cooperat...
Tiffani Williams, Marc Smith