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ICNC
2005
Springer
15 years 7 months ago
Local Search for the Maximum Parsimony Problem
Abstract. Four local search algorithms are investigated for the phylogenetic tree reconstruction problem under the Maximum Parsimony criterion. A new subtree swapping neighborhood ...
Adrien Goëffon, Jean-Michel Richer, Jin-Kao H...
BMCBI
2010
135views more  BMCBI 2010»
15 years 2 months ago
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Background: Genomic data provide a wealth of new information for phylogenetic analysis. Yet making use of this data requires phylogenetic methods that can efficiently analyze extr...
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulens...
115
Voted
IJBRA
2006
92views more  IJBRA 2006»
15 years 1 months ago
Jumpstarting phylogenetic analysis
: Phylogenetic analysis is a central tool in studies of comparative genomics. When a new region of DNA is isolated and sequenced, researchers are often forced to throw away months ...
Jesse Mecham, Mark J. Clement, Quinn Snell, Todd F...
146
Voted
ALIFE
2004
15 years 1 months ago
Using Avida to Test the Effects of Natural Selection on Phylogenetic Reconstruction Methods
Phylogenetic trees group organisms by their ancestral relationships. There are a number of distinct algorithms used to reconstruct these trees from molecular sequence data, but dif...
George I. Hagstrom, Dehua H. Hang, Charles Ofria, ...
ESANN
2007
15 years 3 months ago
Visualisation of tree-structured data through generative probabilistic modelling
We present a generative probabilistic model for the topographic mapping of tree structured data. The model is formulated as constrained mixture of hidden Markov tree models. A nat...
Nikolaos Gianniotis, Peter Tino