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TCBB
2008
122views more  TCBB 2008»
15 years 1 months ago
Mixed Integer Linear Programming for Maximum-Parsimony Phylogeny Inference
Reconstruction of phylogenetic trees is a fundamental problem in computational biology. While excellent heuristic methods are available for many variants of this problem, new adva...
Srinath Sridhar, Fumei Lam, Guy E. Blelloch, R. Ra...
ENTCS
2006
143views more  ENTCS 2006»
15 years 1 months ago
Hiproofs: A Hierarchical Notion of Proof Tree
Motivated by the concerns of theorem-proving, we generalise the notion of proof tree to that of hierarchical proof tree. Hierarchical trees extend ordinary trees by adding partial...
Ewen Denney, John Power, Konstantinos Tourlas
BMCBI
2010
118views more  BMCBI 2010»
15 years 2 months ago
From learning taxonomies to phylogenetic learning: Integration of 16S rRNA gene data into FAME-based bacterial classification
Background: Machine learning techniques have shown to improve bacterial species classification based on fatty acid methyl ester (FAME) data. Nonetheless, FAME analysis has a limit...
Bram Slabbinck, Willem Waegeman, Peter Dawyndt, Pa...
NAR
2008
125views more  NAR 2008»
15 years 1 months ago
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
Phylogenetic analyses are central to many research areas in biology and typically involve the identification of homologous sequences, their multiple alignment, the phylogenetic re...
Alexis Dereeper, V. Guignon, G. Blanc, Stép...
GD
2004
Springer
15 years 7 months ago
Visualisation of Large and Complex Networks Using PolyPlane
This paper discusses a new method for visualisation of large and complex networks in three dimensions. In particular, we focus on visualising the core tree structure of the large a...
Seok-Hee Hong, Tom Murtagh