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TALG
2008
67views more  TALG 2008»
15 years 1 months ago
Structure and linear-time recognition of 4-leaf powers
A graph G is the k-leaf power of a tree T if its vertices are leaves of T such that two vertices are adjacent in G if and only if their distance in T is at most k. Then T is a k-le...
Andreas Brandstädt, Van Bang Le, R. Sritharan
BMCBI
2005
118views more  BMCBI 2005»
15 years 1 months ago
Vestige: Maximum likelihood phylogenetic footprinting
Background: Phylogenetic footprinting is the identification of functional regions of DNA by their evolutionary conservation. This is achieved by comparing orthologous regions from...
Matthew J. Wakefield, Peter Maxwell, Gavin A. Hutt...
JCB
2007
99views more  JCB 2007»
15 years 1 months ago
Duplication and Inversion History of a Tandemly Repeated Genes Family
Given a phylogenetic tree for a family of tandemly repeated genes and their signed order on the chromosome, we aim to find the minimum number of inversions compatible with an evo...
Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk, ...
JCB
1998
105views more  JCB 1998»
15 years 1 months ago
Constructing and Counting Phylogenetic Invariants
Abstract. The method of invariants is an approach to the problem of reconstructing the phylogenetic tree of a collection of m taxa using nucleotide sequence data. Models for the re...
Steven N. Evans, Xiaowen Zhou
TCBB
2010
166views more  TCBB 2010»
15 years 8 days ago
Approximate Maximum Parsimony and Ancestral Maximum Likelihood
— We explore the maximum parsimony (MP) and ancestral maximum likelihood (AML) criteria in phylogenetic tree reconstruction. Both problems are NP hard, so we seek approximate sol...
Noga Alon, Benny Chor, Fabio Pardi, Anat Rapoport