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BMCBI
2006
107views more  BMCBI 2006»
15 years 1 months ago
Simplifying gene trees for easier comprehension
Background: In the genomic age, gene trees may contain large amounts of data making them hard to read and understand. Therefore, an automated simplification is important. Results:...
Paul-Ludwig Lott, Marvin Mundry, Christoph Sassenb...
BMCBI
2010
108views more  BMCBI 2010»
15 years 1 months ago
iGTP: A software package for large-scale gene tree parsimony analysis
Background: The ever-increasing wealth of genomic sequence information provides an unprecedented opportunity for large-scale phylogenetic analysis. However, species phylogeny infe...
Ruchi Chaudhary, Mukul S. Bansal, André Weh...
133
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GECCO
2006
Springer
167views Optimization» more  GECCO 2006»
15 years 5 months ago
Estimating the destructiveness of crossover on binary tree representations
In some cases, evolutionary algorithms represent individuals as typical binary trees with n leaves and n-1 internal nodes. When designing a crossover operator for a particular rep...
Luke Sheneman, James A. Foster
FOCS
2006
IEEE
15 years 8 months ago
The Kesten-Stigum Reconstruction Bound Is Tight for Roughly Symmetric Binary Channels
We establish the exact threshold for the reconstruction problem for a binary asymmetric channel on the b-ary tree, provided that the asymmetry is sufficiently small. This is the ...
Christian Borgs, Jennifer T. Chayes, Elchanan Moss...
128
Voted
BMCBI
2007
125views more  BMCBI 2007»
15 years 1 months ago
Identification of discriminative characteristics for clusters from biologic data with InforBIO software
Background: There are a number of different methods for generation of trees and algorithms for phylogenetic analysis in the study of bacterial taxonomy. Genotypic information, suc...
Naoto Tanaka, Masataka Uchino, Satoru Miyazaki, Hi...