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IJCBDD
2008
113views more  IJCBDD 2008»
15 years 1 months ago
Parsimony accelerated Maximum Likelihood searches
: Phylogenetic search is a key tool used in a variety of biological research endeavors. However, this search problem is known to be computationally difficult, due to the astronomic...
Kenneth Sundberg, Timothy O'Connor, Hyrum Carroll,...
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DM
2008
113views more  DM 2008»
15 years 1 months ago
Multivariate Fuss-Catalan numbers
Catalan numbers C(n) = 1 n+1 2n n enumerate binary trees and Dyck paths. The distribution of paths with respect to their number k of factors is given by ballot numbers B(n, k) = n-...
Jean-Christophe Aval
BMCBI
2007
148views more  BMCBI 2007»
15 years 2 months ago
BPhyOG: An interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes
Background: Overlapping genes (OGs) in bacterial genomes are pairs of adjacent genes of which the coding sequences overlap partly or entirely. With the rapid accumulation of seque...
Yingqin Luo, Cong Fu, Da-Yong Zhang, Kui Lin
BMCBI
2008
91views more  BMCBI 2008»
15 years 2 months ago
t2prhd: a tool to study the patterns of repeat evolution
Background: The models developed to characterize the evolution of multigene families (such as the birth-and-death and the concerted models) have also been applied on the level of ...
Botond Sipos, Kálmán Somogyi, Istv&a...
BMCBI
2011
14 years 9 months ago
Tree Pruner: An efficient tool for selecting data from a biased genetic database
Background: Large databases of genetic data are often biased in their representation. Thus, selection of genetic data with desired properties, such as evolutionary representation ...
Mohan Krishnamoorthy, Pragneshkumar Patel, Mira Di...