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146
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BMCBI
2005
113views more  BMCBI 2005»
15 years 2 months ago
Pathway level analysis of gene expression using singular value decomposition
Background: A promising direction in the analysis of gene expression focuses on the changes in expression of specific predefined sets of genes that are known in advance to be rela...
John K. Tomfohr, Jun Lu, Thomas B. Kepler
WABI
2009
Springer
155views Bioinformatics» more  WABI 2009»
15 years 9 months ago
A Markov Classification Model for Metabolic Pathways
Background: This paper considers the problem of identifying pathways through metabolic networks that relate to a specific biological response. Our proposed model, HME3M, first ide...
Timothy Hancock, Hiroshi Mamitsuka
ISI
2007
Springer
15 years 8 months ago
SIGHTS: A Software System for Finding Coalitions and Leaders in a Social Network
Abstract—We present an extended version of a software system SIGHTS1 (Statistical Identification of Groups Hidden in Time and Space), which can be used for the discovery, analys...
Jeffrey Baumes, Mark K. Goldberg, Mykola Hayvanovy...
145
Voted
IPMI
2009
Springer
15 years 9 months ago
Exploratory fMRI Analysis without Spatial Normalization
Abstract. We present an exploratory method for simultaneous parcellation of multisubject fMRI data into functionally coherent areas. The method is based on a solely functional repr...
Danial Lashkari, Polina Golland
BMCBI
2010
171views more  BMCBI 2010»
15 years 2 months ago
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Background: Cluster analysis is an important technique for the exploratory analysis of biological data. Such data is often high-dimensional, inherently noisy and contains outliers...
Benjamin Georgi, Ivan Gesteira Costa, Alexander Sc...