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CHI
2008
ACM
16 years 7 days ago
The effects of semantic grouping on visual search
This paper reports on work-in-progress to better understand how users visually interact with hierarchically organized semantic information. Experimental reaction time and eye move...
Tim Halverson, Anthony J. Hornof
RECOMB
2009
Springer
16 years 14 days ago
Searching Protein 3-D Structures in Linear Time
Finding similar structures from 3-D structure databases of proteins is becoming more and more important issue in the post-genomic molecular biology. To compare 3-D structures of tw...
Tetsuo Shibuya
BMCBI
2004
120views more  BMCBI 2004»
14 years 11 months ago
An approach to large scale identification of non-obvious structural similarities between proteins
Background: A new sequence independent bioinformatics approach allowing genome-wide search for proteins with similar three dimensional structures has been developed. By utilizing ...
Artem Cherkasov, Steven J. M. Jones
BMCBI
2006
143views more  BMCBI 2006»
14 years 12 months ago
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Background: Recent progress in cDNA and EST sequencing is yielding a deluge of sequence data. Like database search results and proteome databases, this data gives rise to inferred...
Michael Spitzer, Stefan Lorkowski, Paul Cullen, Al...
BMCBI
2006
78views more  BMCBI 2006»
14 years 12 months ago
Subfamily logos: visualization of sequence deviations at alignment positions with high information content
Background: Recognition of relevant sequence deviations can be valuable for elucidating functional differences between protein subfamilies. Interesting residues at highly conserve...
Eric Beitz