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BMCBI
2011
14 years 3 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
NAR
2008
122views more  NAR 2008»
14 years 11 months ago
The Rice Annotation Project Database (RAP-DB): 2008 update
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated ann...
BMCBI
2010
111views more  BMCBI 2010»
14 years 12 months ago
Protein sequences classification by means of feature extraction with substitution matrices
Background: This paper deals with the preprocessing of protein sequences for supervised classification. Motif extraction is one way to address that task. It has been largely used ...
Rabie Saidi, Mondher Maddouri, Engelbert Mephu Ngu...
WWW
2008
ACM
16 years 16 days ago
Pagerank for product image search
In this paper, we cast the image-ranking problem into the task of identifying "authority" nodes on an inferred visual similarity graph and propose an algorithm to analyz...
Yushi Jing, Shumeet Baluja
BMCBI
2008
121views more  BMCBI 2008»
14 years 12 months ago
BioSAVE: Display of scored annotation within a sequence context
Background: Visualization of sequence annotation is a common feature in many bioinformatics tools. For many applications it is desirable to restrict the display of such annotation...
Richard F. Pollock, Boris Adryan