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» Visualization of Gene Combinations
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IPM
2008
85views more  IPM 2008»
15 years 4 months ago
A new variant of the Pathfinder algorithm to generate large visual science maps in cubic time
In the last few years, there is an increasing interest to generate visual representations of very large scientific domains. A methodology based on the combined use of ISI
Arnaud Quirin, Oscar Cordón, Jose Santamar&...
BMCBI
2008
106views more  BMCBI 2008»
15 years 5 months ago
SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi,
Background: Over 60% of protein-coding genes in vertebrates express mRNAs that undergo alternative splicing. The resulting collection of transcript isoforms poses significant chal...
Michael C. Ryan, Barry Zeeberg, Natasha J. Caplen,...
BMCBI
2004
154views more  BMCBI 2004»
15 years 4 months ago
Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments
Background: With ever increasing numbers of closely related virus genomes being sequenced, it has become desirable to be able to compare two genomes at a level more detailed than ...
Ryan Brodie, Alex J. Smith, Rachel L. Roper, Vasil...
NAR
2007
115views more  NAR 2007»
15 years 4 months ago
PReMod: a database of genome-wide mammalian cis-regulatory module predictions
We describe PReMod, a new database of genomewide cis-regulatory module (CRM) predictions for both the human and the mouse genomes. The prediction algorithm, described previously i...
Vincent Ferretti, Christian Poitras, Dominique Ber...
NAR
2011
357views Computer Vision» more  NAR 2011»
14 years 11 months ago
miRGator v2.0 : an integrated system for functional investigation of microRNAs
miRGator is an integrated database of microRNA (miRNA)-associated gene expression, target prediction, disease association and genomic annotation, which aims to facilitate function...
Sooyoung Cho, Yukyung Jun, Sanghyun Lee, Hyung-Seo...