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WABI
2009
Springer
128views Bioinformatics» more  WABI 2009»
16 years 22 days ago
Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models
Abstract. Computational inference of transcriptional regulatory networks remains a challenging problem, in part due to the lack of strong network models. In this paper we present e...
Xiuwei Zhang, Bernard M. E. Moret
EUROPAR
2009
Springer
16 years 22 days ago
A Multilevel Parallelization Framework for High-Order Stencil Computations
Stencil based computation on structured grids is a common kernel to broad scientific applications. The order of stencils increases with the required precision, and it is a challeng...
Hikmet Dursun, Ken-ichi Nomura, Liu Peng, Richard ...
ICCS
2009
Springer
16 years 21 days ago
A Holistic Approach for Performance Measurement and Analysis for Petascale Applications
Abstract. Contemporary high-end Terascale and Petascale systems are composed of hundreds of thousands of commodity multi-core processors interconnected with high-speed custom netwo...
Heike Jagode, Jack Dongarra, Sadaf R. Alam, Jeffre...
CDC
2008
IEEE
125views Control Systems» more  CDC 2008»
16 years 19 days ago
Dynamical structure analysis of sparsity and minimality heuristics for reconstruction of biochemical networks
— Network reconstruction, i.e. obtaining network structure from input-output information, is a central theme in systems biology. A variety of approaches aim to obtaining structur...
Russell Howes, Lee John Eccleston, Jorge M. Goncal...
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CIBCB
2007
IEEE
16 years 15 days ago
Motifs and Modules in Fractured Functional Yeast Networks
The integration of diverse data sets into probabilistic functional networks is an active and important area of research in systems biology. In this paper we fracture a previously p...
Jennifer Hallinan, Anil Wipat